Full information on isolate konnai 17 clone1_wgs (id:2708)
Provenance/primary metadata
- id
- 2708
- isolate
- konnai 17 clone1_wgs
- country
- Japan
- continent
- Asia
- region
- Hokkaido
- species
- Borrelia bavariensis
- year
- 2011
- source
- tick
- detailed source
- Ixodes persulcatus
- sender
- Volker Fingerle, Bavarian Health and Food Safety Authority, Germany
- curator
- Auto Tagger
- update history
- 13 updates show details
- date entered
- 2020-02-17
- datestamp
- 2023-01-27
Sequence bin
- contigs
- 43
- total length
- 1,300,543 bp
- max length
- 405,549 bp
- mean length
- 30,246 bp
- N50
- 213,343
- L50
- 3
- N90
- 14,172
- L90
- 13
- N95
- 7,336
- L95
- 20
- %GC
- 27.90
- Ns
- 0
- gaps
- 0
- loci tagged
- 804
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Borreliella garinii | Spirochaetes > Spirochaetia > Spirochaetales > Borreliaceae > Borreliella > Borreliella garinii | 100% |
Analysis performed: 2022-09-01
Schemes and loci
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