Full information on isolate 20047 (id:153)
Provenance/primary metadata
- id
- 153
- isolate
- 20047
- alias
- Bg_type strain
- country
- France
- continent
- Europe
- species
- Borrelia garinii
- source
- tick
- detailed source
- Ixodes ricinus
- collector
- J. F. Anderson
- sender
- Muriel Cornet, Institute Pasteur Paris
- curator
- Sabrina Hepner, Bavarian Health and Food Safety Authority (E-mail: sabrina.hepner@lgl.bayern.de)
- update history
- 12 updates show details
- date entered
- 2015-01-29
- datestamp
- 2022-12-21
Sequence bin
- contigs
- 11
- total length
- 1,229,416 bp
- max length
- 906,449 bp
- mean length
- 111,766 bp
- N50
- 906,449
- L50
- 1
- N90
- 27,093
- L90
- 7
- N95
- 26,552
- L95
- 9
- %GC
- 28.10
- Ns
- 0
- gaps
- 0
- loci tagged
- 805
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Borreliella garinii | Spirochaetes > Spirochaetia > Spirochaetales > Borreliaceae > Borreliella > Borreliella garinii | 100% |
Analysis performed: 2022-09-01
Schemes and loci
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