Full information on isolate A0174 (id:2679)
Provenance/primary metadata
- id
- 2679
- isolate
- A0174
- aliases
- ABLT01; GCA_000182055.1; PRJNA27921; PRJNA55003; SAMN02470265
- variety serovar
- anthracis
- country
- Canada
- continent
- North America
- year
- 1995
Tracking
- rMLST database accession
- 1146
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 16 updates show details
- date entered
- 2019-11-13
- datestamp
- 2022-10-12
Sequence bin
- contigs
- 60
- total length
- 5,291,908 bp
- max length
- 672,784 bp
- mean length
- 88,199 bp
- N50
- 155,716
- L50
- 9
- N90
- 40,330
- L90
- 32
- N95
- 21,448
- L95
- 40
- %GC
- 35.18
- Ns
- 0
- gaps
- 0
- loci tagged
- 4,918
Annotation quality metrics
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
MLST | 7 | 6 | 85 | |
Ribosomal MLST | 53 | 26 | 49 | |
B. cereus cgMLST | 1568 | 1500 | 95 | |
B. anthracis cgMLST | 3803 | 3778 | 99 |
Analysis
rMLST species identification
Rank | Taxon | Taxonomy | Support | Matches |
---|---|---|---|---|
SPECIES | Bacillus anthracis | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus anthracis | 100% |
Analysis performed: 2021-03-15
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Ba_cgc_200 | B. anthracis cgMLST | Single-linkage | 200 | experimental | 1 (545 isolates) |
Ba_cgc_100 | B. anthracis cgMLST | Single-linkage | 100 | experimental | 1 (261 isolates) |
Ba_cgc_50 | B. anthracis cgMLST | Single-linkage | 50 | experimental | 1 (253 isolates) |
Ba_cgc_25 | B. anthracis cgMLST | Single-linkage | 25 | experimental | 6 (48 isolates) |
Ba_cgc_10 | B. anthracis cgMLST | Single-linkage | 10 | experimental | 7 (8 isolates) |
Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 11 (654 isolates) |
Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 11 (648 isolates) |
Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 11 (554 isolates) |
Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 23 (341 isolates) |
Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 23 (262 isolates) |
Ba_cgc_200 | B. anthracis cgMLST | Single-linkage | 200 | experimental | 1 (545 isolates) |
Ba_cgc_100 | B. anthracis cgMLST | Single-linkage | 100 | experimental | 1 (261 isolates) |
Ba_cgc_50 | B. anthracis cgMLST | Single-linkage | 50 | experimental | 1 (253 isolates) |
Ba_cgc_25 | B. anthracis cgMLST | Single-linkage | 25 | experimental | 6 (48 isolates) |
Ba_cgc_10 | B. anthracis cgMLST | Single-linkage | 10 | experimental | 7 (8 isolates) |
Ba_cgc_5 | B. anthracis cgMLST | Single-linkage | 5 | experimental | 378 (1 isolate) |
Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 11 (654 isolates) |
Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 11 (648 isolates) |
Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 11 (554 isolates) |
Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 23 (341 isolates) |
Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 23 (262 isolates) |
Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 23 (1 isolate) |
Schemes and loci
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