Full information on isolate A0174 (id:2679)

Provenance/primary metadata

id
2679
isolate
A0174
aliases
ABLT01; GCA_000182055.1; PRJNA27921; PRJNA55003; SAMN02470265
variety serovar
anthracis
country
Canada
continent
North America
year
1995

Tracking

rMLST database accession
1146
sender
Keith Jolley, University of Oxford, UK
curator
Auto Tagger
update history
16 updates show details
date entered
2019-11-13
datestamp
2022-10-12

Sequence bin

contigs
60
total length
5,291,908 bp
max length
672,784 bp
mean length
88,199 bp
N50
155,716
L50
9
N90
40,330
L90
32
N95
21,448
L95
40
%GC
35.18
Ns
0
gaps
0
loci tagged
4,918

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST7685
Ribosomal MLST532649
B. cereus cgMLST1568150095
B. anthracis cgMLST3803377899

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bacillus anthracis Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus anthracis 100%

Analysis performed: 2021-03-15

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Ba_cgc_200B. anthracis cgMLSTSingle-linkage200experimental1 (545 isolates)
Ba_cgc_100B. anthracis cgMLSTSingle-linkage100experimental1 (261 isolates)
Ba_cgc_50B. anthracis cgMLSTSingle-linkage50experimental1 (253 isolates)
Ba_cgc_25B. anthracis cgMLSTSingle-linkage25experimental6 (48 isolates)
Ba_cgc_10B. anthracis cgMLSTSingle-linkage10experimental7 (8 isolates)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental11 (654 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental11 (648 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental11 (554 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental23 (341 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental23 (262 isolates)
Ba_cgc_200B. anthracis cgMLSTSingle-linkage200experimental1 (545 isolates)
Ba_cgc_100B. anthracis cgMLSTSingle-linkage100experimental1 (261 isolates)
Ba_cgc_50B. anthracis cgMLSTSingle-linkage50experimental1 (253 isolates)
Ba_cgc_25B. anthracis cgMLSTSingle-linkage25experimental6 (48 isolates)
Ba_cgc_10B. anthracis cgMLSTSingle-linkage10experimental7 (8 isolates)
Ba_cgc_5B. anthracis cgMLSTSingle-linkage5experimental378 (1 isolate)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental11 (654 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental11 (648 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental11 (554 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental23 (341 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental23 (262 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental23 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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