Full information on isolate DSM12442 (id:2677)

Provenance/primary metadata

id
2677
isolate
DSM12442
aliases
ACMX01; GCA_000161455.1; NZ_ACMX00000000; PRJNA29707; PRJNA55213; SAMN00727631; SRS265318
variety serovar
pseudomycoides
country
USA
continent
North America
source
soil
comments
Also 454 sequenced

Tracking

rMLST database accession
545
sender
Keith Jolley, University of Oxford, UK
curator
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update history
20 updates show details
date entered
2019-11-13
datestamp
2022-10-17

Sequence bin

contigs
305
total length
5,752,014 bp
max length
466,454 bp
mean length
18,860 bp
N50
72,236
L50
23
N90
11,031
L90
94
N95
5,804
L95
128
%GC
35.37
Ns
40
gaps
40
loci tagged
1,603

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
B. cereus cgMLST1568151796

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bacillus pseudomycoides Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus pseudomycoides 100%

Analysis performed: 2021-03-15

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental20 (7 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental20 (6 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental21 (6 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental21 (6 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental21 (6 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental21 (5 isolates)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental20 (7 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental20 (6 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental21 (6 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental21 (6 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental21 (6 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental21 (5 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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