Full information on isolate Rock3-17 (id:2676)

Provenance/primary metadata

id
2676
isolate
Rock3-17
aliases
ACMW01; GCA_000161435.1; NZ_ACMW01000000; PRJNA29705; PRJNA55211; SAMN00727643; SRS265330
variety serovar
pseudomycoides
country
USA
continent
North America
source
soil
comments
Updated species to Bacillus pseudomycoides following NCBI changes [Oct 2018].

Tracking

rMLST database accession
544
sender
Keith Jolley, University of Oxford, UK
curator
Auto Tagger
update history
21 updates show details
date entered
2019-11-13
datestamp
2022-10-17

Sequence bin

contigs
311
total length
5,682,854 bp
max length
215,709 bp
mean length
18,273 bp
N50
59,359
L50
29
N90
11,278
L90
110
N95
6,516
L95
143
%GC
35.39
Ns
27
gaps
25
loci tagged
1,597

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
B. cereus cgMLST1568151496

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bacillus pseudomycoides Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus pseudomycoides 100%

Analysis performed: 2021-03-15

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental19 (25 isolates)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental19 (25 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental19 (1 isolate)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental20 (1 isolate)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental20 (1 isolate)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental20 (1 isolate)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental20 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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