Full information on isolate Rock3-17 (id:2676)
Provenance/primary metadata
- id
- 2676
- isolate
- Rock3-17
- aliases
- ACMW01; GCA_000161435.1; NZ_ACMW01000000; PRJNA29705; PRJNA55211; SAMN00727643; SRS265330
- variety serovar
- pseudomycoides
- country
- USA
- continent
- North America
- source
- soil
- comments
- Updated species to Bacillus pseudomycoides following NCBI changes [Oct 2018].
Tracking
- rMLST database accession
- 544
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 21 updates show details
- date entered
- 2019-11-13
- datestamp
- 2022-10-17
Sequence bin
- contigs
- 311
- total length
- 5,682,854 bp
- max length
- 215,709 bp
- mean length
- 18,273 bp
- N50
- 59,359
- L50
- 29
- N90
- 11,278
- L90
- 110
- N95
- 6,516
- L95
- 143
- %GC
- 35.39
- Ns
- 27
- gaps
- 25
- loci tagged
- 1,597
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| B. cereus cgMLST | 1568 | 1514 | 96 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Bacillus pseudomycoides | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus pseudomycoides | 100% |
Analysis performed: 2021-03-15
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 19 (25 isolates) |
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 19 (25 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 19 (1 isolate) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 20 (1 isolate) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 20 (1 isolate) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 20 (1 isolate) |
| Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 20 (1 isolate) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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