Full information on isolate DSM2048 (id:2674)
Provenance/primary metadata
- id
- 2674
- isolate
- DSM2048
- aliases
- ACMU01; GCA_000003925.1; NZ_ACMU00000000; PRJNA29701; PRJNA55207; SAMN00727646; SRS265333
- variety serovar
- mycoides
- country
- Unknown
- source
- soil
Tracking
- rMLST database accession
- 542
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 25 updates show details
- date entered
- 2019-11-13
- datestamp
- 2022-10-17
Sequence bin
- contigs
- 200
- total length
- 5,541,906 bp
- max length
- 231,697 bp
- mean length
- 27,710 bp
- N50
- 84,268
- L50
- 22
- N90
- 17,331
- L90
- 77
- N95
- 10,212
- L95
- 96
- %GC
- 35.21
- Ns
- 30
- gaps
- 28
- loci tagged
- 1,662
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 52 | 98 | |
| B. cereus cgMLST | 1568 | 1536 | 97 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Bacillus mycoides | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus mycoides | 100% |
Analysis performed: 2021-03-15
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 125 (7 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 18 (2 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 19 (2 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 19 (2 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 19 (2 isolates) |
| Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 19 (2 isolates) |
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 125 (7 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 18 (2 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 19 (2 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 19 (2 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 19 (2 isolates) |
| Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 19 (2 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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