Full information on isolate DSM2048 (id:2674)

Provenance/primary metadata

id
2674
isolate
DSM2048
aliases
ACMU01; GCA_000003925.1; NZ_ACMU00000000; PRJNA29701; PRJNA55207; SAMN00727646; SRS265333
variety serovar
mycoides
country
Unknown
source
soil

Tracking

rMLST database accession
542
sender
Keith Jolley, University of Oxford, UK
curator
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update history
25 updates show details
date entered
2019-11-13
datestamp
2022-10-17

Sequence bin

contigs
200
total length
5,541,906 bp
max length
231,697 bp
mean length
27,710 bp
N50
84,268
L50
22
N90
17,331
L90
77
N95
10,212
L95
96
%GC
35.21
Ns
30
gaps
28
loci tagged
1,662

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST535298
B. cereus cgMLST1568153697

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bacillus mycoides Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus mycoides 100%

Analysis performed: 2021-03-15

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental125 (7 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental18 (2 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental19 (2 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental19 (2 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental19 (2 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental19 (2 isolates)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental125 (7 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental18 (2 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental19 (2 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental19 (2 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental19 (2 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental19 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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