Full information on isolate Rock4-2 (id:2673)

Provenance/primary metadata

id
2673
isolate
Rock4-2
aliases
ACMM01; GCA_000161275.1; NZ_ACMM00000000; PRJNA29685; PRJNA55191; SAMN00727714; SRS265374
variety serovar
cereus
country
USA
continent
North America
source
soil
comments
Isolated from soil in Rockville, Maryland; Also 454 sequenced

Tracking

rMLST database accession
535
sender
Keith Jolley, University of Oxford, UK
curator
Auto Tagger
update history
21 updates show details
date entered
2019-11-13
datestamp
2023-02-03

Sequence bin

contigs
323
total length
5,737,687 bp
max length
457,379 bp
mean length
17,764 bp
N50
68,998
L50
25
N90
10,610
L90
103
N95
4,438
L95
146
%GC
34.88
Ns
112
gaps
78
loci tagged
2,656

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST534381
B. cereus cgMLST1568149295

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bacillus cereus Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus cereus 100%

Analysis performed: 2021-03-15

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental17 (48 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental17 (20 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental18 (3 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental18 (2 isolates)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental17 (48 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental17 (20 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental18 (3 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental18 (2 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental18 (1 isolate)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental18 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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