Full information on isolate Rock4-18 (id:2672)

Provenance/primary metadata

id
2672
isolate
Rock4-18
aliases
ACMN01; GCA_000161295.1; NZ_ACMN01000000; PRJNA29687; PRJNA55193; SAMN00727648; SRS265335
variety serovar
cereus
country
USA
continent
North America
source
soil
comments
Isolated from soil in Rockville, Maryland; Also 454 sequenced

Tracking

rMLST database accession
534
sender
Keith Jolley, University of Oxford, UK
curator
Auto Tagger
update history
19 updates show details
date entered
2019-11-13
datestamp
2022-10-17

Sequence bin

contigs
176
total length
5,906,034 bp
max length
237,443 bp
mean length
33,558 bp
N50
84,313
L50
23
N90
24,035
L90
73
N95
14,487
L95
88
%GC
34.98
Ns
71
gaps
63
loci tagged
1,796

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
B. cereus cgMLST1568154298

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
GENUS Bacillus Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus 100%

Analysis performed: 2021-03-15

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental518 (17 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental16 (5 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental17 (2 isolates)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental518 (17 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental16 (5 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental17 (2 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental17 (1 isolate)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental17 (1 isolate)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental17 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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