Full information on isolate Rock3-29 (id:2670)

Provenance/primary metadata

id
2670
isolate
Rock3-29
aliases
ACMJ01; GCA_000161215.1; NZ_ACMJ01000000; PRJNA29679; PRJNA55185; SAMN00727649; SRS265336
variety serovar
cereus
country
USA
continent
North America
source
soil
comments
Isolated from soil in Rockville, Maryland; Also 454 sequenced

Tracking

rMLST database accession
531
sender
Keith Jolley, University of Oxford, UK
curator
Auto Tagger
update history
18 updates show details
date entered
2019-11-13
datestamp
2022-10-17

Sequence bin

contigs
187
total length
5,859,411 bp
max length
299,394 bp
mean length
31,334 bp
N50
97,142
L50
19
N90
20,935
L90
69
N95
11,304
L95
87
%GC
34.94
Ns
34
gaps
33
loci tagged
1,786

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
B. cereus cgMLST1568154198

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
GENUS Bacillus Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus 100%

Analysis performed: 2021-03-15

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental15 (46 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental15 (13 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental16 (13 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental16 (13 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental81 (13 isolates)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental15 (46 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental15 (13 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental16 (13 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental16 (13 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental81 (13 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental16 (1 isolate)

Schemes and loci

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