Full information on isolate Rock3-29 (id:2670)
Provenance/primary metadata
- id
- 2670
- isolate
- Rock3-29
- aliases
- ACMJ01; GCA_000161215.1; NZ_ACMJ01000000; PRJNA29679; PRJNA55185; SAMN00727649; SRS265336
- variety serovar
- cereus
- country
- USA
- continent
- North America
- source
- soil
- comments
- Isolated from soil in Rockville, Maryland; Also 454 sequenced
Tracking
- rMLST database accession
- 531
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 18 updates show details
- date entered
- 2019-11-13
- datestamp
- 2022-10-17
Sequence bin
- contigs
- 187
- total length
- 5,859,411 bp
- max length
- 299,394 bp
- mean length
- 31,334 bp
- N50
- 97,142
- L50
- 19
- N90
- 20,935
- L90
- 69
- N95
- 11,304
- L95
- 87
- %GC
- 34.94
- Ns
- 34
- gaps
- 33
- loci tagged
- 1,786
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| B. cereus cgMLST | 1568 | 1541 | 98 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| GENUS | Bacillus | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus | 100% |
Analysis performed: 2021-03-15
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 15 (46 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 15 (13 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 16 (13 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 16 (13 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 81 (13 isolates) |
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 15 (46 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 15 (13 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 16 (13 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 16 (13 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 81 (13 isolates) |
| Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 16 (1 isolate) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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