Full information on isolate Rock1-3 (id:2668)
Provenance/primary metadata
- id
- 2668
- isolate
- Rock1-3
- aliases
- ACMG01; GCA_000161155.1; PRJNA29673; PRJNA55179; SAMN00727650; SRS265337
- variety serovar
- cereus
- country
- USA
- continent
- North America
- source
- soil
- comments
- Isolated from soil in Rockville, Maryland; Also 454 sequenced
Tracking
- rMLST database accession
- 529
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 19 updates show details
- date entered
- 2019-11-13
- datestamp
- 2023-02-03
Sequence bin
- contigs
- 171
- total length
- 5,842,754 bp
- max length
- 251,373 bp
- mean length
- 34,169 bp
- N50
- 85,223
- L50
- 21
- N90
- 23,200
- L90
- 70
- N95
- 14,678
- L95
- 85
- %GC
- 34.93
- Ns
- 59
- gaps
- 55
- loci tagged
- 1,792
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| B. cereus cgMLST | 1568 | 1538 | 98 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| GENUS | Bacillus | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus | 100% |
Analysis performed: 2022-10-19
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 14 (33 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 14 (12 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 15 (10 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 15 (10 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 15 (8 isolates) |
| Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 15 (4 isolates) |
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 14 (33 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 14 (12 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 15 (10 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 15 (10 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 15 (8 isolates) |
| Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 15 (4 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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