Full information on isolate Rock1-3 (id:2668)

Provenance/primary metadata

id
2668
isolate
Rock1-3
aliases
ACMG01; GCA_000161155.1; PRJNA29673; PRJNA55179; SAMN00727650; SRS265337
variety serovar
cereus
country
USA
continent
North America
source
soil
comments
Isolated from soil in Rockville, Maryland; Also 454 sequenced

Tracking

rMLST database accession
529
sender
Keith Jolley, University of Oxford, UK
curator
Auto Tagger
update history
19 updates show details
date entered
2019-11-13
datestamp
2023-02-03

Sequence bin

contigs
171
total length
5,842,754 bp
max length
251,373 bp
mean length
34,169 bp
N50
85,223
L50
21
N90
23,200
L90
70
N95
14,678
L95
85
%GC
34.93
Ns
59
gaps
55
loci tagged
1,792

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
B. cereus cgMLST1568153898

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
GENUS Bacillus Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus 100%

Analysis performed: 2022-10-19

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental14 (33 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental14 (12 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental15 (10 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental15 (10 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental15 (8 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental15 (4 isolates)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental14 (33 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental14 (12 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental15 (10 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental15 (10 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental15 (8 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental15 (4 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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