Full information on isolate R309803 (id:2666)
Provenance/primary metadata
- id
- 2666
- isolate
- R309803
- aliases
- ACLY01; GCA_000160995.1; NZ_ACLY00000000; PRJNA29647; PRJNA55153; SAMN00726683; SRS265282
- variety serovar
- cereus
- country
- UK
- continent
- Europe
- host
- human
- comments
- Isolated from blood from a case of septicemia in the UK; also 454 sequenced
Tracking
- rMLST database accession
- 527
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 17 updates show details
- date entered
- 2019-11-13
- datestamp
- 2022-10-17
Sequence bin
- contigs
- 227
- total length
- 5,563,553 bp
- max length
- 276,893 bp
- mean length
- 24,510 bp
- N50
- 78,307
- L50
- 23
- N90
- 20,240
- L90
- 77
- N95
- 12,213
- L95
- 93
- %GC
- 35.36
- Ns
- 7
- gaps
- 7
- loci tagged
- 1,804
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| B. cereus cgMLST | 1568 | 1546 | 98 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Bacillus cereus | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus cereus | 100% |
Analysis performed: 2021-03-15
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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Analysis: