Full information on isolate CDC 684 (id:2665)
Provenance/primary metadata
- id
- 2665
- isolate
- CDC 684
- aliases
- CP001215; GCA_000021445.1; NC_012581; PRJNA31329; PRJNA59303; SAMN02603931
- variety serovar
- anthracis
- country
- USA
- continent
- North America
- year
- 1964
Tracking
- rMLST database accession
- 97
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 13 updates show details
- date entered
- 2019-11-13
- datestamp
- 2022-10-12
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| B. cereus cgMLST | 1568 | 1555 | 99 | |
| B. anthracis cgMLST | 3803 | 3750 | 98 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Bacillus anthracis | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus anthracis | 100% |
Analysis performed: 2021-03-15
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Ba_cgc_200 | B. anthracis cgMLST | Single-linkage | 200 | experimental | 1 (545 isolates) |
| Ba_cgc_100 | B. anthracis cgMLST | Single-linkage | 100 | experimental | 4 (55 isolates) |
| Ba_cgc_50 | B. anthracis cgMLST | Single-linkage | 50 | experimental | 4 (45 isolates) |
| Ba_cgc_25 | B. anthracis cgMLST | Single-linkage | 25 | experimental | 148 (2 isolates) |
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 11 (654 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 11 (648 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 11 (554 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 23 (341 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 29 (46 isolates) |
| Ba_cgc_200 | B. anthracis cgMLST | Single-linkage | 200 | experimental | 1 (545 isolates) |
| Ba_cgc_100 | B. anthracis cgMLST | Single-linkage | 100 | experimental | 4 (55 isolates) |
| Ba_cgc_50 | B. anthracis cgMLST | Single-linkage | 50 | experimental | 4 (45 isolates) |
| Ba_cgc_25 | B. anthracis cgMLST | Single-linkage | 25 | experimental | 148 (2 isolates) |
| Ba_cgc_10 | B. anthracis cgMLST | Single-linkage | 10 | experimental | 335 (1 isolate) |
| Ba_cgc_5 | B. anthracis cgMLST | Single-linkage | 5 | experimental | 377 (1 isolate) |
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 11 (654 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 11 (648 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 11 (554 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 23 (341 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 29 (46 isolates) |
| Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 12 (1 isolate) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: