Full information on isolate AH187 (id:2660)
Provenance/primary metadata
- id
- 2660
- isolate
- AH187
- aliases
- CP001177; GCA_000021225.1; NC_011658; PRJNA17715; PRJNA58753; SAMN02604058
- variety serovar
- cereus
- country
- UK
- continent
- Europe
- year
- 1972
- host
- human
- comments
- from vomit
Tracking
- rMLST database accession
- 38
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 17 updates show details
- date entered
- 2019-11-13
- datestamp
- 2022-10-13
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| B. cereus cgMLST | 1568 | 1559 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| GENUS | Bacillus | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus | 100% |
Analysis performed: 2021-03-15
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 9 (37 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 9 (37 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 9 (34 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 9 (28 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 201 (25 isolates) |
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 9 (37 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 9 (37 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 9 (34 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 9 (28 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 201 (25 isolates) |
| Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 9 (1 isolate) |
Schemes and loci
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Tools
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