Full information on isolate ATCC 10987 (id:2654)
Provenance/primary metadata
- id
- 2654
- isolate
- ATCC 10987
- aliases
- AE017194; GCA_000008005.1; NC_003909; PRJNA57673; PRJNA74; SAMN02603979
- variety serovar
- cereus
- country
- Canada
- continent
- North America
- source
- milk products
- comments
- cheese
Tracking
- rMLST database accession
- 32
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 20 updates show details
- date entered
- 2019-11-13
- datestamp
- 2022-10-17
Publication (1)
- Rasko DA, Ravel J, Økstad OA, Helgason E, Cer RZ, Jiang L, Shores KA, Fouts DE, Tourasse NJ, Angiuoli SV, Kolonay J, Nelson WC, Kolstø AB, Fraser CM, Read TD (2004). The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1. Nucleic Acids Res 32:977-88
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 51 | 96 | |
| B. cereus cgMLST | 1568 | 1523 | 97 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| GENUS | Bacillus | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus | 100% |
Analysis performed: 2021-03-15
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 3 (5 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 3 (5 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 3 (5 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 3 (4 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 3 (4 isolates) |
| Bc_cgc_500 | B. cereus cgMLST | Single-linkage | 500 | experimental | 3 (5 isolates) |
| Bc_cgc_250 | B. cereus cgMLST | Single-linkage | 250 | experimental | 3 (5 isolates) |
| Bc_cgc_100 | B. cereus cgMLST | Single-linkage | 100 | experimental | 3 (5 isolates) |
| Bc_cgc_50 | B. cereus cgMLST | Single-linkage | 50 | experimental | 3 (4 isolates) |
| Bc_cgc_25 | B. cereus cgMLST | Single-linkage | 25 | experimental | 3 (4 isolates) |
| Bc_cgc_10 | B. cereus cgMLST | Single-linkage | 10 | experimental | 3 (1 isolate) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: