Full information on isolate E33L (id:2653)

Provenance/primary metadata

id
2653
isolate
E33L
aliases
CP000001; GCA_000011625.1; NC_006274; PRJNA12468; PRJNA58103; SAMN02598269
variety serovar
cereus
country
Namibia
continent
Africa
year
1996
source
other
comments
zebra carcass

Tracking

rMLST database accession
31
sender
Keith Jolley, University of Oxford, UK
curator
Auto Tagger
update history
18 updates show details
date entered
2019-11-13
datestamp
2022-10-17

Publication (1)

  • Han CS, Xie G, Challacombe JF, Altherr MR, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, Glavina T, Goodwin LA, Green LD, Hill KK, Hitchcock P, Jackson PJ, Keim P, Kewalramani AR, Longmire J, Lucas S, Malfatti S, McMurry K, Meincke LJ, Misra M, Moseman BL, Mundt M, Munk AC, Okinaka RT, Parson-Quintana B, Reilly LP, Richardson P, Robinson DL, Rubin E, Saunders E, Tapia R, Tesmer JG, Thayer N, Thompson LS, Tice H, Ticknor LO, Wills PL, Brettin TS, Gilna P (2006). Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. J Bacteriol 188:3382-90

Sequence bin

contigs
1
length
5,300,915 bp
%GC
35.35
Ns
0
gaps
0
loci tagged
3,881

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
B. cereus cgMLST1568154598

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bacillus cereus Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus > Bacillus cereus 100%

Analysis performed: 2021-03-15

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental2 (2 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental2 (2 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental2 (2 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental2 (2 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental2 (2 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental2 (2 isolates)
Bc_cgc_500B. cereus cgMLSTSingle-linkage500experimental2 (2 isolates)
Bc_cgc_250B. cereus cgMLSTSingle-linkage250experimental2 (2 isolates)
Bc_cgc_100B. cereus cgMLSTSingle-linkage100experimental2 (2 isolates)
Bc_cgc_50B. cereus cgMLSTSingle-linkage50experimental2 (2 isolates)
Bc_cgc_25B. cereus cgMLSTSingle-linkage25experimental2 (2 isolates)
Bc_cgc_10B. cereus cgMLSTSingle-linkage10experimental2 (2 isolates)

Schemes and loci

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