Full information on isolate BC112 (id:2458)
Provenance/primary metadata
- id
- 2458
- isolate
- BC112
- country
- Italy
- continent
- Europe
- region
- Apulia
- year
- 2017
- source
- blood
- host
- human
- human disease
- septicaemia
Tracking
- sender
- Antonio Parisi, Istituto Zooprofilattico Sperimentale Puglia e Basilicata
- curator
- Auto Tagger
- update history
- 21 updates show details
- date entered
- 2018-07-02
- datestamp
- 2022-10-17
Sequence bin
- contigs
- 51
- total length
- 5,605,263 bp
- max length
- 1,124,057 bp
- mean length
- 109,908 bp
- N50
- 240,799
- L50
- 6
- N90
- 79,323
- L90
- 22
- N95
- 48,345
- L95
- 26
- %GC
- 34.89
- Ns
- 1217
- gaps
- 8
- loci tagged
- 2,742
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| B. cereus cgMLST | 1568 | 1551 | 98 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| GENUS | Bacillus | Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus | 100% |
Analysis performed: 2021-03-15
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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Analysis: