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Full information on isolate BCC0399 (id:88)

Provenance/primary metadata

id: 88
isolate: BCC0399
alias: R-10725
species: Burkholderia ambifaria
genomovar: VII
country: Italy
continent: Europe
source: environmental
BCC number: BCC0399
recA RFLP: AE
ENA accession: ERS785037 www.ebi.ac.uk
sender: Adam Baldwin, University of Warwick, UK
curator: Auto Tagger
update history: 4 updates show details
date entered: 2006-07-18
datestamp: 2016-02-04

Publication (1)

Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73

Sequence bin

contigs: 23
total length: 7,359,380 bp
max length: 1,801,236 bp
mean length: 319,974 bp
N50: 1,250,493
L50: 3
N90: 206,126
L90: 9
N95: 126,688
L95: 11
%GC: 66.75
Ns: 1
gaps: 1
loci tagged: 60

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Burkholderia ambifaria	Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria	100%

Analysis performed: 2021-03-15

Schemes and loci

MLST

atpD: 74 S

gltB: 71 S

gyrB: 63 S

recA: 83 S

lepA: 50 S

phaC: 47 S

trpB: 64 S

ST: 84

clonal complex: Not defined

Ribosomal MLST

BACT000001 (rpsA): 13942 S

BACT000002 (rpsB): 10297 S

BACT000003 (rpsC): 9343 S

BACT000004 (rpsD): 9986 S

BACT000005 (rpsE): 797 S

BACT000006 (rpsF): 613 S

BACT000007 (rpsG): 645 S

BACT000008 (rpsH): 628 S

BACT000009 (rpsI): 654 S

BACT000010 (rpsJ): 632 S

BACT000011 (rpsK): 596 S

BACT000012 (rpsL): 505 S

BACT000013 (rpsM): 613 S

BACT000014 (rpsN): 592 S

BACT000015 (rpsO): 899 S

BACT000016 (rpsP): 606 S

BACT000017 (rpsQ): 595 S

BACT000018 (rpsR): 602 S

BACT000019 (rpsS): 561 S

BACT000020 (rpsT): 602 S

BACT000021 (rpsU): 617 S

BACT000030 (rplA): 11201 S

BACT000031 (rplB): 11080 S

BACT000032 (rplC): 9758 S

BACT000033 (rplD): 645 S

BACT000034 (rplE): 8766 S

BACT000035 (rplF): 617 S

BACT000036 (rplL): 8836 S

BACT000038 (rplI): 640 S

BACT000039 (rplJ): 724 S

BACT000040 (rplK): 9010 S

BACT000042 (rplM): 697 S

BACT000043 (rplN): 477 S

BACT000044 (rplO): 696 S

BACT000045 (rplP): 597 S

BACT000046 (rplQ): 7827 S

BACT000047 (rplR): 7483 S

BACT000048 (rplS): 708 S

BACT000049 (rplT): 8637 S

BACT000050 (rplU): 571 S

BACT000051 (rplV): 565 S

BACT000052 (rplW): 7233 S

BACT000053 (rplX): 563 S

BACT000056 (rpmA): 591 S

BACT000057 (rpmB): 6437 S

BACT000058 (rpmC): 377 S

BACT000059 (rpmD): 446 S

BACT000060 (rpmE): 7545 S

BACT000061 (rpmF): 889 S

BACT000062 (rpmG): 6454 S

BACT000063 (rpmH): 681 S

BACT000064 (rpmI): 553 S

BACT000065 (rpmJ): 398 S

rST: 151927

genus: Burkholderia

species: Burkholderia ambifaria

subspecies: Not defined

lineage: Not defined

sublineage: Not defined

other designation: Not defined

notes: Not defined

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