Full information on isolate BCC0250 (id:85)
Provenance/primary metadata
- id
- 85
- isolate
- BCC0250
- aliases
- CEP0958; WM2
- species
- Burkholderia ambifaria
- genomovar
- VII
- country
- Australia
- continent
- Oceania
- source
- CF patient
- detail of isolation
- Sputum
- BCC number
- BCC0250
- year
- 1994
- recA RFLP
- N
- ENA accession
- ERS784819 www.ebi.ac.uk
- sender
- Adam Baldwin, University of Warwick, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2005-07-01
- datestamp
- 2016-02-04
Publications (2)
- Baldwin A, Mahenthiralingam E, Drevinek P, Vandamme P, Govan JR, Waine DJ, LiPuma JJ, Chiarini L, Dalmastri C, Henry DA, Speert DP, Honeybourne D, Maiden MC, Dowson CG (2007). Environmental Burkholderia cepacia complex isolates in human infections. Emerg Infect Dis 13:458-61
- Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73
Sequence bin
- contigs
- 22
- total length
- 7,353,668 bp
- max length
- 2,092,710 bp
- mean length
- 334,258 bp
- N50
- 720,978
- L50
- 3
- N90
- 325,577
- L90
- 9
- N95
- 126,535
- L95
- 11
- %GC
- 66.84
- Ns
- 514
- gaps
- 6
- loci tagged
- 60
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia ambifaria | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria | 100% |
Analysis performed: 2021-03-15
Schemes and loci
Ribosomal MLST
- rST
- 151923
- genus
- Burkholderia
- species
- Burkholderia ambifaria
- subspecies
- Not defined
- lineage
- Not defined
- sublineage
- Not defined
- other designation
- Not defined
- notes
- Not defined
Tools
Export:
Analysis: