Full information on isolate BCC0118 (id:80)
Provenance/primary metadata
- id
- 80
- isolate
- BCC0118
- alias
- CEP0617
- species
- Burkholderia ambifaria
- genomovar
- VII
- country
- USA
- continent
- North America
- source
- CF patient
- detail of isolation
- Sputum
- BCC number
- BCC0118
- year
- 1996
- recA RFLP
- N
- ENA accession
- ERS784989 www.ebi.ac.uk
- sender
- Adam Baldwin, University of Warwick, UK
- curator
- Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
- update history
- 7 updates show details
- date entered
- 2005-07-01
- datestamp
- 2016-03-09
Publication (1)
- Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73
Sequence bin
- contigs
- 22
- total length
- 7,494,568 bp
- max length
- 1,117,733 bp
- mean length
- 340,663 bp
- N50
- 659,556
- L50
- 5
- N90
- 255,634
- L90
- 12
- N95
- 150,526
- L95
- 14
- %GC
- 66.83
- Ns
- 0
- gaps
- 0
- loci tagged
- 60
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia ambifaria | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria | 98% |
Analysis performed: 2021-03-15
Schemes and loci
Ribosomal MLST
- rST
- 19911
- genus
- Burkholderia
- species
- Burkholderia ambifaria
- subspecies
- Not defined
- lineage
- Not defined
- sublineage
- Not defined
- other designation
- Not defined
- notes
- Not defined
Tools
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Analysis: