Full information on isolate BCC0151 (id:72)
Provenance/primary metadata
- id
- 72
- isolate
- BCC0151
- alias
- FC0353
- species
- Burkholderia vietnamiensis
- genomovar
- V
- country
- USA
- continent
- North America
- source
- CF patient
- BCC number
- BCC0151
- year
- 1996
- recA RFLP
- AK
- ENA accession
- ERS784826 www.ebi.ac.uk
- sender
- Adam Baldwin, University of Warwick, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2005-07-01
- datestamp
- 2016-02-04
Publication (1)
- Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73
Sequence bin
- contigs
- 93
- total length
- 6,084,126 bp
- max length
- 316,436 bp
- mean length
- 65,421 bp
- N50
- 168,450
- L50
- 13
- N90
- 44,779
- L90
- 41
- N95
- 33,537
- L95
- 49
- %GC
- 67.33
- Ns
- 233
- gaps
- 11
- loci tagged
- 60
Analysis
rMLST species identification
Rank | Taxon | Taxonomy | Support | Matches |
---|---|---|---|---|
SPECIES | Burkholderia vietnamiensis | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia vietnamiensis | 100% |
Analysis performed: 2021-03-15
Schemes and loci
Ribosomal MLST
- rST
- 152041
- genus
- Burkholderia
- species
- Burkholderia vietnamiensis
- subspecies
- Not defined
- lineage
- Not defined
- sublineage
- Not defined
- other designation
- Not defined
- notes
- Not defined
Tools
Export:
Analysis: