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Full information on isolate BCC0581 (id:71)

Provenance/primary metadata

id: 71
isolate: BCC0581
aliases: C8395; NA1
species: Burkholderia vietnamiensis
genomovar: V
country: Canada
continent: North America
source: CF patient
detail of isolation: Sputum
BCC number: BCC0581
year: 1998
recA RFLP: B
ENA accession: ERS785041 www.ebi.ac.uk
sender: Adam Baldwin, University of Warwick, UK
curator: Auto Tagger
update history: 6 updates show details
date entered: 2005-07-01
datestamp: 2016-02-04

Publications (2)

Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73
Waine DJ, Henry DA, Baldwin A, Speert DP, Honeybourne D, Mahenthiralingam E, Dowson CG (2007). Reliability of multilocus sequence typing of the Burkholderia cepacia complex in cystic fibrosis. J Cyst Fibros 6:215-9

Sequence bin

contigs: 2,995
total length: 9,513,729 bp
max length: 1,311,554 bp
mean length: 3,177 bp
N50: 299,306
L50: 10
N90: 792
L90: 716
N95: 404
L95: 1,594
%GC: 66.11
Ns: 461263
gaps: 1554
loci tagged: 60

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Burkholderia vietnamiensis	Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia vietnamiensis	97%
SPECIES	Pandoraea pnomenusa	Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Pandoraea > Pandoraea pnomenusa	2%

Analysis performed: 2021-03-15

Schemes and loci

MLST

atpD: 27 S

gltB: 103 S

gyrB: 16 S

recA: 23 S

lepA: 49 S

phaC: 56 S

trpB: 63 S

ST: 67

clonal complex: 319

Ribosomal MLST

BACT000001 (rpsA): 13935 S

BACT000002 (rpsB): 10276 S

BACT000003 (rpsC): 9336 S

BACT000004 (rpsD): 572 S

BACT000005 (rpsE): 8618 S

BACT000006 (rpsF): 486 S

BACT000007 (rpsG): 491, 2191 S

BACT000008 (rpsH): 504 S

BACT000009 (rpsI): 4218 S

BACT000010 (rpsJ): 507 S

BACT000011 (rpsK): 7666 S

BACT000012 (rpsL): 8349 S

BACT000013 (rpsM): 466 S

BACT000014 (rpsN): 490 S

BACT000015 (rpsO): 483 S

BACT000016 (rpsP): 6192 S

BACT000017 (rpsQ): 480 S

BACT000018 (rpsR): 3321 S

BACT000019 (rpsS): 412 S

BACT000020 (rpsT): 497 S

BACT000021 (rpsU): 368, 2634 S

BACT000030 (rplA): 11193 S

BACT000031 (rplB): 11074 S

BACT000032 (rplC): 9756 S

BACT000033 (rplD): 523 S

BACT000034 (rplE): 4060 S

BACT000035 (rplF): 9219 S

BACT000036 (rplL): 8789 S

BACT000038 (rplI): 552 S

BACT000039 (rplJ): 8414 S

BACT000040 (rplK): 465 S

BACT000042 (rplM): 519 S

BACT000043 (rplN): 477 S

BACT000044 (rplO): 8743 S

BACT000045 (rplP): 440 S

BACT000046 (rplQ): 7820 S

BACT000047 (rplR): 6242 S

BACT000048 (rplS): 466 S

BACT000049 (rplT): 476 S

BACT000050 (rplU): 421 S

BACT000051 (rplV): 500 S

BACT000052 (rplW): 496 S

BACT000053 (rplX): 501, 1917 S

BACT000056 (rpmA): 470 S

BACT000057 (rpmB): 392 S

BACT000058 (rpmC): 377, 1521 S

BACT000059 (rpmD): 396 S

BACT000060 (rpmE): 501 S

BACT000061 (rpmF): 414 S

BACT000062 (rpmG): 479 S

BACT000063 (rpmH): 396 S

BACT000064 (rpmI): 473 S

BACT000065 (rpmJ): 398, 1308 S

rST: 152048

genus: Burkholderia

species: Burkholderia vietnamiensis

subspecies: Not defined

lineage: Not defined

sublineage: Not defined

other designation: Not defined

notes: Not defined

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