Full information on isolate BCC0104 (id:68)
Provenance/primary metadata
- id
- 68
- isolate
- BCC0104
- alias
- CEP0047
- species
- Burkholderia vietnamiensis
- genomovar
- V
- country
- USA
- continent
- North America
- source
- non-CF patient
- detail of isolation
- Lymph node
- BCC number
- BCC0104
- year
- 1993
- recA RFLP
- A
- ENA accession
- ERS785007 www.ebi.ac.uk
- sender
- Adam Baldwin, University of Warwick, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2005-07-01
- datestamp
- 2016-02-04
Publication (1)
- Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73
Sequence bin
- contigs
- 90
- total length
- 7,060,597 bp
- max length
- 684,600 bp
- mean length
- 78,452 bp
- N50
- 228,863
- L50
- 10
- N90
- 48,330
- L90
- 33
- N95
- 36,112
- L95
- 41
- %GC
- 66.85
- Ns
- 71
- gaps
- 2
- loci tagged
- 60
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia vietnamiensis | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia vietnamiensis | 100% |
Analysis performed: 2021-03-15
Schemes and loci
Ribosomal MLST
- rST
- 152036
- genus
- Burkholderia
- species
- Burkholderia vietnamiensis
- subspecies
- Not defined
- lineage
- Not defined
- sublineage
- Not defined
- other designation
- Not defined
- notes
- Not defined
Tools
Export:
Analysis: