Full information on isolate BCC0042 (id:65)
Provenance/primary metadata
- id
- 65
- isolate
- BCC0042
- alias
- J1702
- species
- Burkholderia vietnamiensis
- genomovar
- V
- country
- USA
- continent
- North America
- source
- hospital environment
- detail of isolation
- Hospital equipment
- BCC number
- BCC0042
- year
- 1994
- recA RFLP
- AK
- ENA accession
- ERS784972 www.ebi.ac.uk
- sender
- Adam Baldwin, University of Warwick, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2005-07-01
- datestamp
- 2016-02-04
Publications (2)
- Baldwin A, Mahenthiralingam E, Drevinek P, Vandamme P, Govan JR, Waine DJ, LiPuma JJ, Chiarini L, Dalmastri C, Henry DA, Speert DP, Honeybourne D, Maiden MC, Dowson CG (2007). Environmental Burkholderia cepacia complex isolates in human infections. Emerg Infect Dis 13:458-61
- Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73
Sequence bin
- contigs
- 49
- total length
- 6,286,813 bp
- max length
- 1,486,783 bp
- mean length
- 128,303 bp
- N50
- 667,227
- L50
- 3
- N90
- 110,800
- L90
- 14
- N95
- 69,901
- L95
- 18
- %GC
- 66.65
- Ns
- 418
- gaps
- 6
- loci tagged
- 60
Analysis
rMLST species identification
Rank | Taxon | Taxonomy | Support | Matches |
---|---|---|---|---|
SPECIES | Burkholderia vietnamiensis | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia vietnamiensis | 100% |
Analysis performed: 2021-03-15
Schemes and loci
Ribosomal MLST
- rST
- 45174
- genus
- Burkholderia
- species
- Burkholderia vietnamiensis
- subspecies
- Not defined
- lineage
- Not defined
- sublineage
- Not defined
- other designation
- Not defined
- notes
- Not defined
Tools
Export:
Analysis: