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Full information on isolate BCC0244 (id:368)

Provenance/primary metadata

id: 368
isolate: BCC0244
alias: CEP0938
species: Burkholderia multivorans
genomovar: II
country: Canada
continent: North America
source: CF patient
detail of isolation: Sputum
BCC number: BCC0244
year: 1998
recA RFLP: F
ENA accession: ERS785004 www.ebi.ac.uk
sender: Adam Baldwin, University of Warwick, UK
curator: Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
update history: 7 updates show details
date entered: 2007-12-03
datestamp: 2016-03-09

Publication (1)

Baldwin A, Mahenthiralingam E, Drevinek P, Pope C, Waine DJ, Henry DA, Speert DP, Carter P, Vandamme P, LiPuma JJ, Dowson CG (2008). Elucidating global epidemiology of Burkholderia multivorans in cases of cystic fibrosis by multilocus sequence typing. J Clin Microbiol 46:290-5

Sequence bin

contigs: 41
total length: 6,574,055 bp
max length: 955,088 bp
mean length: 160,343 bp
N50: 435,992
L50: 5
N90: 145,849
L90: 14
N95: 72,350
L95: 18
%GC: 67.17
Ns: 119
gaps: 2
loci tagged: 60

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Burkholderia multivorans	Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia multivorans	100%

Analysis performed: 2021-03-15

Schemes and loci

MLST

atpD: 122 S

gltB: 148 S

gyrB: 164 S

recA: 80 S

lepA: 10 S

phaC: 45 S

trpB: 302 S

ST: 1088

clonal complex: Not defined

Ribosomal MLST

BACT000001 (rpsA): 13948 S

BACT000002 (rpsB): 1252 S

BACT000003 (rpsC): 8340 S

BACT000004 (rpsD): 9991 S

BACT000005 (rpsE): 800 S

BACT000006 (rpsF): 790 S

BACT000007 (rpsG): 846 S

BACT000008 (rpsH): 776 S

BACT000009 (rpsI): 812 S

BACT000010 (rpsJ): 850 S

BACT000011 (rpsK): 772 S

BACT000012 (rpsL): 505 S

BACT000013 (rpsM): 998 S

BACT000014 (rpsN): 794 S

BACT000015 (rpsO): 796 S

BACT000016 (rpsP): 729 S

BACT000017 (rpsQ): 935 S

BACT000018 (rpsR): 918 S

BACT000019 (rpsS): 667 S

BACT000020 (rpsT): 724 S

BACT000021 (rpsU): 622, 623 S

BACT000030 (rplA): 11205 S

BACT000031 (rplB): 11091 S

BACT000032 (rplC): 887 S

BACT000033 (rplD): 833 S

BACT000034 (rplE): 852 S

BACT000035 (rplF): 863 S

BACT000036 (rplL): 815 S

BACT000038 (rplI): 1040 S

BACT000039 (rplJ): 4548 S

BACT000040 (rplK): 6551 S

BACT000042 (rplM): 838 S

BACT000043 (rplN): 972 S

BACT000044 (rplO): 8753 S

BACT000045 (rplP): 961 S

BACT000046 (rplQ): 943 S

BACT000047 (rplR): 739 S

BACT000048 (rplS): 4695 S

BACT000049 (rplT): 831 S

BACT000050 (rplU): 788 S

BACT000051 (rplV): 790 S

BACT000052 (rplW): 771 S

BACT000053 (rplX): 769 S

BACT000056 (rpmA): 1003 S

BACT000057 (rpmB): 688 S

BACT000058 (rpmC): 665 S

BACT000059 (rpmD): 623 S

BACT000060 (rpmE): 750 S

BACT000061 (rpmF): 743 S

BACT000062 (rpmG): 954 S

BACT000063 (rpmH): 682 S

BACT000064 (rpmI): 691 S

BACT000065 (rpmJ): 398 S

rST: 44852

genus: Burkholderia

species: Burkholderia multivorans

subspecies: Not defined

lineage: Not defined

sublineage: Not defined

other designation: Not defined

notes: Not defined

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