Full information on isolate BCC0190 (id:190)
Provenance/primary metadata
- id
- 190
- isolate
- BCC0190
- aliases
- FC0622; P220
- species
- Burkholderia vietnamiensis
- genomovar
- V
- country
- USA
- continent
- North America
- source
- CF patient
- detail of isolation
- Sputum
- BCC number
- BCC0190
- recA RFLP
- A
- ENA accession
- ERS785015 www.ebi.ac.uk
- sender
- Adam Baldwin, University of Warwick, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2007-03-29
- datestamp
- 2016-02-04
Publication (1)
- Baldwin A, Mahenthiralingam E, Drevinek P, Vandamme P, Govan JR, Waine DJ, LiPuma JJ, Chiarini L, Dalmastri C, Henry DA, Speert DP, Honeybourne D, Maiden MC, Dowson CG (2007). Environmental Burkholderia cepacia complex isolates in human infections. Emerg Infect Dis 13:458-61
Sequence bin
- contigs
- 44
- total length
- 6,164,308 bp
- max length
- 674,790 bp
- mean length
- 140,098 bp
- N50
- 523,281
- L50
- 6
- N90
- 116,096
- L90
- 15
- N95
- 81,262
- L95
- 18
- %GC
- 66.75
- Ns
- 606
- gaps
- 2
- loci tagged
- 60
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia vietnamiensis | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia vietnamiensis | 100% |
Analysis performed: 2021-03-15
Schemes and loci
Ribosomal MLST
- rST
- 45174
- genus
- Burkholderia
- species
- Burkholderia vietnamiensis
- subspecies
- Not defined
- lineage
- Not defined
- sublineage
- Not defined
- other designation
- Not defined
- notes
- Not defined
Tools
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Analysis: