Full information on isolate BCC0477 (id:1667)
Provenance/primary metadata
- id
- 1667
- isolate
- BCC0477
- aliases
- AU0216; R-12555
- species
- Burkholderia ambifaria
- genomovar
- VII
- country
- USA
- continent
- North America
- source
- CF patient
- detail of isolation
- Sputum
- BCC number
- BCC0477
- year
- 1997
- recA RFLP
- L
- ENA accession
- ERS784882 www.ebi.ac.uk
- comments
- AU0216 (=BCC0477) was previously ST-483, but WGS revealed ST-925. Old isolate id 571 was deleted and retired.
- sender
- Matthew Bull, Cardiff University, UK
- curator
- Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
- update history
- 4 updates show details
- date entered
- 2015-10-09
- datestamp
- 2017-10-16
Sequence bin
- contigs
- 54
- total length
- 7,813,508 bp
- max length
- 811,558 bp
- mean length
- 144,695 bp
- N50
- 289,778
- L50
- 8
- N90
- 110,821
- L90
- 25
- N95
- 81,982
- L95
- 29
- %GC
- 66.46
- Ns
- 0
- gaps
- 0
- loci tagged
- 60
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia ambifaria | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria | 100% |
Analysis performed: 2021-03-15
Schemes and loci
Ribosomal MLST
- rST
- 66242
- genus
- Burkholderia
- species
- Burkholderia ambifaria
- subspecies
- Not defined
- lineage
- Not defined
- sublineage
- Not defined
- other designation
- Not defined
- notes
- Not defined
Tools
Export:
Analysis: