Full information on isolate BCC0316 (id:1664)

Provenance/primary metadata

id
1664
isolate
BCC0316
aliases
HI 2347; M54; R-5142
species
Burkholderia ambifaria
genomovar
VII
country
USA
continent
North America
source
environmental
detail of isolation
Soil
BCC number
BCC0316
year
1998
recA RFLP
L
ENA accession
ERS784850 www.ebi.ac.uk
comments
Isolate M54 (=BCC0316) was previously ST-73, but WGS revealed ST-454. Old isolate id 77 was deleted and retired.
sender
Matthew Bull, Cardiff University, UK
curator
Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
update history
4 updates show details
date entered
2015-10-09
datestamp
2017-10-16

Publication (1)

  • Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73

Sequence bin

contigs
51
total length
7,634,362 bp
max length
820,904 bp
mean length
149,694 bp
N50
348,262
L50
7
N90
116,958
L90
19
N95
79,898
L95
23
%GC
66.54
Ns
653
gaps
4
loci tagged
60

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia ambifaria Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria 100%

Analysis performed: 2021-03-15

Schemes and loci

MLST

atpD
32  S 
gltB
23  S 
gyrB
20  S 
recA
26  S 
lepA
13  S 
phaC
158  S 
trpB
23  S 
ST
454
clonal complex
73

Ribosomal MLST

BACT000001 (rpsA)
1019  S 
BACT000002 (rpsB)
10307  S 
BACT000003 (rpsC)
969  S 
BACT000004 (rpsD)
995  S 
BACT000005 (rpsE)
797  S 
BACT000006 (rpsF)
909  S 
BACT000007 (rpsG)
1020  S 
BACT000008 (rpsH)
773  S 
BACT000009 (rpsI)
9140  S 
BACT000010 (rpsJ)
632  S 
BACT000011 (rpsK)
994  S 
BACT000012 (rpsL)
505  S 
BACT000013 (rpsM)
993  S 
BACT000014 (rpsN)
592  S 
BACT000015 (rpsO)
899  S 
BACT000016 (rpsP)
728  S 
BACT000017 (rpsQ)
929  S 
BACT000018 (rpsR)
911  S 
BACT000019 (rpsS)
561  S 
BACT000020 (rpsT)
885  S 
BACT000021 (rpsU)
617  S 
BACT000030 (rplA)
11207  S 
BACT000031 (rplB)
1080  S 
BACT000032 (rplC)
1063  S 
BACT000033 (rplD)
645  S 
BACT000034 (rplE)
1028  S 
BACT000035 (rplF)
617  S 
BACT000036 (rplL)
8849  S 
BACT000038 (rplI)
920  S 
BACT000039 (rplJ)
8419  S 
BACT000040 (rplK)
1011  S 
BACT000042 (rplM)
976  S 
BACT000043 (rplN)
7792  S 
BACT000044 (rplO)
696  S 
BACT000045 (rplP)
597  S 
BACT000046 (rplQ)
936  S 
BACT000047 (rplR)
893  S 
BACT000048 (rplS)
1027  S 
BACT000049 (rplT)
8671  S 
BACT000050 (rplU)
571  S 
BACT000051 (rplV)
937  S 
BACT000052 (rplW)
581  S 
BACT000053 (rplX)
887  S 
BACT000056 (rpmA)
591  S 
BACT000057 (rpmB)
553  S 
BACT000058 (rpmC)
377  S 
BACT000059 (rpmD)
446  S 
BACT000060 (rpmE)
7548  S 
BACT000061 (rpmF)
889  S 
BACT000062 (rpmG)
706  S 
BACT000063 (rpmH)
681  S 
BACT000064 (rpmI)
553  S 
BACT000065 (rpmJ)
398  S 
rST
151920
genus
Burkholderia
species
Burkholderia ambifaria
subspecies
Not defined
lineage
Not defined
sublineage
Not defined
other designation
Not defined
notes
Not defined

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