Full information on isolate BCC0316 (id:1664)
Provenance/primary metadata
- id
- 1664
- isolate
- BCC0316
- aliases
- HI 2347; M54; R-5142
- species
- Burkholderia ambifaria
- genomovar
- VII
- country
- USA
- continent
- North America
- source
- environmental
- detail of isolation
- Soil
- BCC number
- BCC0316
- year
- 1998
- recA RFLP
- L
- ENA accession
- ERS784850 www.ebi.ac.uk
- comments
- Isolate M54 (=BCC0316) was previously ST-73, but WGS revealed ST-454. Old isolate id 77 was deleted and retired.
- sender
- Matthew Bull, Cardiff University, UK
- curator
- Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
- update history
- 4 updates show details
- date entered
- 2015-10-09
- datestamp
- 2017-10-16
Publication (1)
- Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73
Sequence bin
- contigs
- 51
- total length
- 7,634,362 bp
- max length
- 820,904 bp
- mean length
- 149,694 bp
- N50
- 348,262
- L50
- 7
- N90
- 116,958
- L90
- 19
- N95
- 79,898
- L95
- 23
- %GC
- 66.54
- Ns
- 653
- gaps
- 4
- loci tagged
- 60
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia ambifaria | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria | 100% |
Analysis performed: 2021-03-15
Schemes and loci
Ribosomal MLST
- rST
- 151920
- genus
- Burkholderia
- species
- Burkholderia ambifaria
- subspecies
- Not defined
- lineage
- Not defined
- sublineage
- Not defined
- other designation
- Not defined
- notes
- Not defined
Tools
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Analysis: