Full information on isolate BCC0267 (id:1663)

Provenance/primary metadata

id
1663
isolate
BCC0267
aliases
BG; CEP0996
species
Burkholderia ambifaria
genomovar
VII
LMG
19467
country
Australia
continent
Oceania
source
CF patient
BCC number
BCC0267
year
1999
recA RFLP
N
ENA accession
ERS784835 www.ebi.ac.uk
comments
LMG 19467 was previously ST-78, but WGS revealed ST-924. Old isolate id 82 was deleted and retired.
sender
Matthew Bull, Cardiff University, UK
curator
Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
update history
6 updates show details
date entered
2015-10-09
datestamp
2018-06-13

Publications (7)

  • Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73
  • Coenye T, Mahenthiralingam E, Henry D, LiPuma JJ, Laevens S, Gillis M, Speert DP, Vandamme P (2001). Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates. Int J Syst Evol Microbiol 51:1481-90
  • Coenye T, Vandamme P, LiPuma JJ, Govan JR, Mahenthiralingam E (2003). Updated version of the Burkholderia cepacia complex experimental strain panel. J Clin Microbiol 41:2797-8
  • Lynch KH, Dennis JJ (2008). Development of a species-specific fur gene-based method for identification of the Burkholderia cepacia complex. J Clin Microbiol 46:447-55
  • Rose H, Baldwin A, Dowson CG, Mahenthiralingam E (2009). Biocide susceptibility of the Burkholderia cepacia complex. J Antimicrob Chemother 63:502-10
  • Seed KD, Dennis JJ (2008). Development of Galleria mellonella as an alternative infection model for the Burkholderia cepacia complex. Infect Immun 76:1267-75
  • Zlosnik JE, Hird TJ, Fraenkel MC, Moreira LM, Henry DA, Speert DP (2008). Differential mucoid exopolysaccharide production by members of the Burkholderia cepacia complex. J Clin Microbiol 46:1470-3

Sequence bin

contigs
22
total length
7,365,344 bp
max length
1,530,330 bp
mean length
334,789 bp
N50
738,741
L50
4
N90
369,382
L90
9
N95
178,156
L95
11
%GC
66.75
Ns
5236
gaps
32
loci tagged
60

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia ambifaria Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria 100%

Analysis performed: 2021-03-15

Schemes and loci

MLST

atpD
39  S 
gltB
29  S 
gyrB
641  S 
recA
29  S 
lepA
17  S 
phaC
17  S 
trpB
26  S 
ST
924
clonal complex
Not defined

Ribosomal MLST

BACT000001 (rpsA)
13958  S 
BACT000002 (rpsB)
10310  S 
BACT000003 (rpsC)
9346  S 
BACT000004 (rpsD)
9986  S 
BACT000005 (rpsE)
8664  S 
BACT000006 (rpsF)
7458  S 
BACT000007 (rpsG)
645  S 
BACT000008 (rpsH)
628  S 
BACT000009 (rpsI)
9142  S 
BACT000010 (rpsJ)
632  S 
BACT000011 (rpsK)
7669  S 
BACT000012 (rpsL)
505  S 
BACT000013 (rpsM)
7700  S 
BACT000014 (rpsN)
592  S 
BACT000015 (rpsO)
7799  S 
BACT000016 (rpsP)
606  S 
BACT000017 (rpsQ)
595  S 
BACT000018 (rpsR)
602  S 
BACT000019 (rpsS)
561  S 
BACT000020 (rpsT)
602  S 
BACT000021 (rpsU)
616, 617  S 
BACT000030 (rplA)
11211  S 
BACT000031 (rplB)
717  S 
BACT000032 (rplC)
9765  S 
BACT000033 (rplD)
9540  S 
BACT000034 (rplE)
8768  S 
BACT000035 (rplF)
617  S 
BACT000036 (rplL)
8825  S 
BACT000038 (rplI)
9510  S 
BACT000039 (rplJ)
724  S 
BACT000040 (rplK)
9086  S 
BACT000042 (rplM)
8493  S 
BACT000043 (rplN)
477  S 
BACT000044 (rplO)
8766  S 
BACT000045 (rplP)
597  S 
BACT000046 (rplQ)
7825  S 
BACT000047 (rplR)
7488  S 
BACT000048 (rplS)
708  S 
BACT000049 (rplT)
828  S 
BACT000050 (rplU)
571  S 
BACT000051 (rplV)
565  S 
BACT000052 (rplW)
581  S 
BACT000053 (rplX)
563  S 
BACT000056 (rpmA)
591  S 
BACT000057 (rpmB)
553  S 
BACT000058 (rpmC)
377  S 
BACT000059 (rpmD)
446  S 
BACT000060 (rpmE)
746  S 
BACT000061 (rpmF)
889  S 
BACT000062 (rpmG)
586  S 
BACT000063 (rpmH)
681  S 
BACT000064 (rpmI)
843  S 
BACT000065 (rpmJ)
398  S 
rST
151924
genus
Burkholderia
species
Burkholderia ambifaria
subspecies
Not defined
lineage
Not defined
sublineage
Not defined
other designation
Not defined
notes
Not defined

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