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Full information on isolate BCC0197 (id:1661)

Provenance/primary metadata

id: 1661
isolate: BCC0197
alias: ATCC 51671
species: Burkholderia ambifaria
country: Unknown
source: environmental
BCC number: BCC0197
ENA accession: ERS785076 www.ebi.ac.uk
sender: Matthew Bull, Cardiff University, UK
curator: Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
update history: 5 updates show details
date entered: 2015-10-09
datestamp: 2017-10-16

Sequence bin

contigs: 26
total length: 7,384,488 bp
max length: 1,598,410 bp
mean length: 284,019 bp
N50: 715,881
L50: 4
N90: 188,208
L90: 10
N95: 183,684
L95: 11
%GC: 66.66
Ns: 1
gaps: 1
loci tagged: 60

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Burkholderia ambifaria	Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria	100%

Analysis performed: 2021-03-15

Schemes and loci

MLST

atpD: 34 S

gltB: 74 S

gyrB: 88 S

recA: 97 S

lepA: 432 S

phaC: 89 S

trpB: 98 S

ST: 923

clonal complex: Not defined

Ribosomal MLST

BACT000001 (rpsA): 13956 S

BACT000002 (rpsB): 10309 S

BACT000003 (rpsC): 9345 S

BACT000004 (rpsD): 9987 S

BACT000005 (rpsE): 653 S

BACT000006 (rpsF): 613 S

BACT000007 (rpsG): 645 S

BACT000008 (rpsH): 8176 S

BACT000009 (rpsI): 654 S

BACT000010 (rpsJ): 632 S

BACT000011 (rpsK): 596 S

BACT000012 (rpsL): 505 S

BACT000013 (rpsM): 613 S

BACT000014 (rpsN): 592 S

BACT000015 (rpsO): 605 S

BACT000016 (rpsP): 606 S

BACT000017 (rpsQ): 595 S

BACT000018 (rpsR): 602 S

BACT000019 (rpsS): 561 S

BACT000020 (rpsT): 602 S

BACT000021 (rpsU): 617 S

BACT000030 (rplA): 11201 S

BACT000031 (rplB): 11103 S

BACT000032 (rplC): 9764 S

BACT000033 (rplD): 645 S

BACT000034 (rplE): 1028 S

BACT000035 (rplF): 617 S

BACT000036 (rplL): 8825 S

BACT000038 (rplI): 9508 S

BACT000039 (rplJ): 8421 S

BACT000040 (rplK): 9010 S

BACT000042 (rplM): 8469 S

BACT000043 (rplN): 477 S

BACT000044 (rplO): 8760 S

BACT000045 (rplP): 7977 S

BACT000046 (rplQ): 7831 S

BACT000047 (rplR): 641 S

BACT000048 (rplS): 708 S

BACT000049 (rplT): 8696 S

BACT000050 (rplU): 571 S

BACT000051 (rplV): 7609 S

BACT000052 (rplW): 581 S

BACT000053 (rplX): 563 S

BACT000056 (rpmA): 591 S

BACT000057 (rpmB): 553 S

BACT000058 (rpmC): 377 S

BACT000059 (rpmD): 446 S

BACT000060 (rpmE): 746 S

BACT000061 (rpmF): 742 S

BACT000062 (rpmG): 586 S

BACT000063 (rpmH): 681 S

BACT000064 (rpmI): 553 S

BACT000065 (rpmJ): 398 S

rST: 151922

genus: Burkholderia

species: Burkholderia ambifaria

subspecies: Not defined

lineage: Not defined

sublineage: Not defined

other designation: Not defined

notes: Not defined

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