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Full information on isolate BCC0192 (id:1660)

Provenance/primary metadata

id: 1660
isolate: BCC0192
aliases: R-8863; Ral-3
species: Burkholderia ambifaria
country: Unknown
source: environmental
BCC number: BCC0192
ENA accession: ERS785047 www.ebi.ac.uk
sender: Matthew Bull, Cardiff University, UK
curator: Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
update history: 6 updates show details
date entered: 2015-10-09
datestamp: 2017-10-16

Sequence bin

contigs: 37
total length: 7,403,495 bp
max length: 1,264,072 bp
mean length: 200,095 bp
N50: 589,134
L50: 5
N90: 163,293
L90: 15
N95: 125,670
L95: 18
%GC: 66.73
Ns: 590
gaps: 4
loci tagged: 60

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Burkholderia ambifaria	Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria	100%

Analysis performed: 2021-03-15

Schemes and loci

MLST

atpD: 33 S

gltB: 86 S

gyrB: 21 S

recA: 50 S

lepA: 14 S

phaC: 58 S

trpB: 82 S

ST: 79

clonal complex: Not defined

Ribosomal MLST

BACT000001 (rpsA): 13951 S

BACT000002 (rpsB): 10308 S

BACT000003 (rpsC): 1161 S

BACT000004 (rpsD): 9994 S

BACT000005 (rpsE): 797 S

BACT000006 (rpsF): 613 S

BACT000007 (rpsG): 8952 S

BACT000008 (rpsH): 773 S

BACT000009 (rpsI): 9141 S

BACT000010 (rpsJ): 632 S

BACT000011 (rpsK): 596 S

BACT000012 (rpsL): 505 S

BACT000013 (rpsM): 7709 S

BACT000014 (rpsN): 592 S

BACT000015 (rpsO): 1024 S

BACT000016 (rpsP): 7229 S

BACT000017 (rpsQ): 595 S

BACT000018 (rpsR): 602 S

BACT000019 (rpsS): 561 S

BACT000020 (rpsT): 602 S

BACT000021 (rpsU): 617 S

BACT000030 (rplA): 11210 S

BACT000031 (rplB): 11098 S

BACT000032 (rplC): 9763 S

BACT000033 (rplD): 645 S

BACT000034 (rplE): 848 S

BACT000035 (rplF): 860 S

BACT000036 (rplL): 8931 S

BACT000038 (rplI): 9503 S

BACT000039 (rplJ): 8420 S

BACT000040 (rplK): 9078 S

BACT000042 (rplM): 836 S

BACT000043 (rplN): 818 S

BACT000044 (rplO): 8756 S

BACT000045 (rplP): 785 S

BACT000046 (rplQ): 7830 S

BACT000047 (rplR): 641 S

BACT000048 (rplS): 842 S

BACT000049 (rplT): 8694 S

BACT000050 (rplU): 571 S

BACT000051 (rplV): 565 S

BACT000052 (rplW): 581 S

BACT000053 (rplX): 563 S

BACT000056 (rpmA): 591 S

BACT000057 (rpmB): 553 S

BACT000058 (rpmC): 377 S

BACT000059 (rpmD): 446 S

BACT000060 (rpmE): 7549 S

BACT000061 (rpmF): 742 S

BACT000062 (rpmG): 706 S

BACT000063 (rpmH): 681 S

BACT000064 (rpmI): 553 S

BACT000065 (rpmJ): 398 S

rST: 151921

genus: Burkholderia

species: Burkholderia ambifaria

subspecies: Not defined

lineage: Not defined

sublineage: Not defined

other designation: Not defined

notes: Not defined

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