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Full information on isolate BCC0191 (id:1659)

Provenance/primary metadata

id: 1659
isolate: BCC0191
alias: HI 2345 (J82)
species: Burkholderia ambifaria
country: USA
continent: North America
source: environmental
BCC number: BCC0191
ENA accession: ERS784799 www.ebi.ac.uk
sender: Matthew Bull, Cardiff University, UK
curator: Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
update history: 4 updates show details
date entered: 2015-10-09
datestamp: 2017-10-16

Sequence bin

contigs: 44
total length: 7,576,326 bp
max length: 1,120,098 bp
mean length: 172,190 bp
N50: 342,219
L50: 6
N90: 111,726
L90: 18
N95: 99,087
L95: 21
%GC: 66.56
Ns: 0
gaps: 0
loci tagged: 60

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Burkholderia ambifaria	Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia ambifaria	100%

Analysis performed: 2021-03-15

Schemes and loci

MLST

atpD: 32 S

gltB: 23 S

gyrB: 20 S

recA: 26 S

lepA: 13 S

phaC: 158 S

trpB: 23 S

ST: 454

clonal complex: 73

Ribosomal MLST

BACT000001 (rpsA): 1019 S

BACT000002 (rpsB): 10307 S

BACT000003 (rpsC): 969 S

BACT000004 (rpsD): 995 S

BACT000005 (rpsE): 797 S

BACT000006 (rpsF): 909 S

BACT000007 (rpsG): 1020 S

BACT000008 (rpsH): 773 S

BACT000009 (rpsI): 9140 S

BACT000010 (rpsJ): 632 S

BACT000011 (rpsK): 994 S

BACT000012 (rpsL): 505 S

BACT000013 (rpsM): 993 S

BACT000014 (rpsN): 592 S

BACT000015 (rpsO): 899 S

BACT000016 (rpsP): 728 S

BACT000017 (rpsQ): 929 S

BACT000018 (rpsR): 911 S

BACT000019 (rpsS): 561 S

BACT000020 (rpsT): 885 S

BACT000021 (rpsU): 617 S

BACT000030 (rplA): 11207 S

BACT000031 (rplB): 1080 S

BACT000032 (rplC): 1063 S

BACT000033 (rplD): 645 S

BACT000034 (rplE): 1028 S

BACT000035 (rplF): 617 S

BACT000036 (rplL): 8849 S

BACT000038 (rplI): 920 S

BACT000039 (rplJ): 8419 S

BACT000040 (rplK): 1011 S

BACT000042 (rplM): 976 S

BACT000043 (rplN): 7792 S

BACT000044 (rplO): 696 S

BACT000045 (rplP): 597 S

BACT000046 (rplQ): 936 S

BACT000047 (rplR): 893 S

BACT000048 (rplS): 1027 S

BACT000049 (rplT): 8671 S

BACT000050 (rplU): 571 S

BACT000051 (rplV): 937 S

BACT000052 (rplW): 581 S

BACT000053 (rplX): 887 S

BACT000056 (rpmA): 591 S

BACT000057 (rpmB): 553 S

BACT000058 (rpmC): 377 S

BACT000059 (rpmD): 446 S

BACT000060 (rpmE): 7548 S

BACT000061 (rpmF): 889 S

BACT000062 (rpmG): 706 S

BACT000063 (rpmH): 681 S

BACT000064 (rpmI): 553 S

BACT000065 (rpmJ): 398 S

rST: 151920

genus: Burkholderia

species: Burkholderia ambifaria

subspecies: Not defined

lineage: Not defined

sublineage: Not defined

other designation: Not defined

notes: Not defined

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