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Full information on isolate BCC0049 (id:115)

Provenance/primary metadata

id: 115
isolate: BCC0049
alias: J503
species: Burkholderia arboris
country: Germany
continent: Europe
source: non-CF patient
BCC number: BCC0049
year: 1994
recA RFLP: J2
ENA accession: ERS785032 www.ebi.ac.uk
comments: Formerly BCC3 (Baldwin et al. 2005. PubMedID 16145124)
sender: Adam Baldwin, University of Warwick, UK
curator: Charlotte Peeters, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium (E-mail: Charlotte.Peeters@UGent.be)
update history: 8 updates show details
date entered: 2006-07-17
datestamp: 2016-03-09

Publication (1)

Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73

Sequence bin

contigs: 43
total length: 8,282,416 bp
max length: 1,234,768 bp
mean length: 192,615 bp
N50: 418,964
L50: 6
N90: 179,776
L90: 18
N95: 94,921
L95: 21
%GC: 66.77
Ns: 609
gaps: 4
loci tagged: 60

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Burkholderia arboris	Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia arboris	100%

Analysis performed: 2021-03-15

Schemes and loci

MLST

atpD: 60 S

gltB: 43 S

gyrB: 36 S

recA: 42 S

lepA: 27 S

phaC: 72 S

trpB: 72 S

ST: 109

clonal complex: 109

Ribosomal MLST

BACT000001 (rpsA): 13946 S

BACT000002 (rpsB): 10299 S

BACT000003 (rpsC): 9344 S

BACT000004 (rpsD): 9990 S

BACT000005 (rpsE): 8621 S

BACT000006 (rpsF): 7456 S

BACT000007 (rpsG): 8949 S

BACT000008 (rpsH): 8182 S

BACT000009 (rpsI): 9131 S

BACT000010 (rpsJ): 7828 S

BACT000011 (rpsK): 7667 S

BACT000012 (rpsL): 505 S

BACT000013 (rpsM): 7707 S

BACT000014 (rpsN): 6983 S

BACT000015 (rpsO): 7798 S

BACT000016 (rpsP): 6390 S

BACT000017 (rpsQ): 6868 S

BACT000018 (rpsR): 6818 S

BACT000019 (rpsS): 6617 S

BACT000020 (rpsT): 7152 S

BACT000021 (rpsU): 5118 S

BACT000030 (rplA): 11478 S

BACT000031 (rplB): 11081 S

BACT000032 (rplC): 9759 S

BACT000033 (rplD): 9538 S

BACT000034 (rplE): 8767 S

BACT000035 (rplF): 9220 S

BACT000036 (rplL): 8838 S

BACT000038 (rplI): 9755 S

BACT000039 (rplJ): 8416 S

BACT000040 (rplK): 9016 S

BACT000042 (rplM): 8488 S

BACT000043 (rplN): 6202 S

BACT000044 (rplO): 8750 S

BACT000045 (rplP): 7974 S

BACT000046 (rplQ): 7828 S

BACT000047 (rplR): 7484 S

BACT000048 (rplS): 8085 S

BACT000049 (rplT): 8663 S

BACT000050 (rplU): 7342 S

BACT000051 (rplV): 7604 S

BACT000052 (rplW): 7234 S

BACT000053 (rplX): 7380 S

BACT000056 (rpmA): 7652 S

BACT000057 (rpmB): 6439 S

BACT000058 (rpmC): 377 S

BACT000059 (rpmD): 5513 S

BACT000060 (rpmE): 7546 S

BACT000061 (rpmF): 414 S

BACT000062 (rpmG): 6455 S

BACT000063 (rpmH): 1920 S

BACT000064 (rpmI): 6373 S

BACT000065 (rpmJ): 398 S

rST: 151953

genus: Burkholderia

species: Burkholderia arboris

subspecies: Not defined

lineage: Not defined

sublineage: Not defined

other designation: Not defined

notes: Not defined

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