Full information on isolate HC-1 (id:1014)

Provenance/primary metadata

id
1014
isolate
HC-1
species
Arcobacter butzleri
country
Spain
continent
Europe
region
Alto Deba
year
2017
age yr
29
sex
female
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
sender
Irati Martinez-Malaxetxebarria, UPV/EHU
curator
Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
update history
3 updates show details
date entered
2021-02-25
datestamp
2021-02-25

Sequence bin

contigs
62
total length
2,274,951 bp
max length
279,888 bp
mean length
36,693 bp
N50
145,964
L50
6
N90
39,329
L90
15
N95
16,650
L95
20
%GC
27.00
Ns
1090
gaps
20
loci tagged
7

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Aliarcobacter butzleri Proteobacteria > Epsilonproteobacteria > Campylobacterales > Arcobacteraceae > Aliarcobacter > Aliarcobacter butzleri 100%

Analysis performed: 2022-12-26

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