Full information on isolate NIPH 527 (id:2247)

Projects

This isolate is a member of the following project:

whole genome MLST
Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website

Provenance/primary metadata

id
2247
isolate
NIPH 527
country
The Netherlands
continent
Europe
year
1984
species
Acinetobacter baumannii
species id method
unknown
source
urine
Genbank accession
APQW00000000.1 www.ncbi.nlm.nih.gov

Antimicrobial resistance

OXA class
Oxacillinases (Class D)
OXA betalactamase
blaOXA-51-like [OXA-69]

Tracking

sender
Raffaele Zarrilli, Universita di Napoli Federico II
curator
Auto Tagger
update history
26 updates show details
date entered
2015-02-26
datestamp
2022-12-27

Sequence bin

contigs
31
total length
4,152,121 bp
max length
1,426,931 bp
mean length
133,940 bp
N50
412,856
L50
3
N90
151,167
L90
10
N95
43,189
L95
13
%GC
39.15
Ns
0
gaps
0
loci tagged
2,906

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST (Oxford)77100
MLST (Pasteur)77100
Ribosomal MLST5353100
A. baumannii cgMLST2133213099

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Acinetobacter baumannii Proteobacteria > Gammaproteobacteria > Moraxellales > Moraxellaceae > Acinetobacter > Acinetobacter baumannii 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Aba_cgc_200A. baumannii cgMLSTSingle-linkage200experimental5 (92 isolates)
Aba_cgc_100A. baumannii cgMLSTSingle-linkage100experimental5 (38 isolates)
Aba_cgc_50A. baumannii cgMLSTSingle-linkage50experimental18 (21 isolates)
Aba_cgc_25A. baumannii cgMLSTSingle-linkage25experimental7 (2 isolates)
Aba_cgc_200A. baumannii cgMLSTSingle-linkage200experimental5 (92 isolates)
Aba_cgc_100A. baumannii cgMLSTSingle-linkage100experimental5 (38 isolates)
Aba_cgc_50A. baumannii cgMLSTSingle-linkage50experimental18 (21 isolates)
Aba_cgc_25A. baumannii cgMLSTSingle-linkage25experimental7 (2 isolates)

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