Full information on isolate AYE (id:2246)

Projects

This isolate is a member of the following project:

whole genome MLST
Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website

Provenance/primary metadata

id
2246
isolate
AYE
country
France
continent
Europe
year
2001
species
Acinetobacter baumannii
species id method
unknown
source
urine
Genbank accession
NC_010410.1 www.ncbi.nlm.nih.gov

Antimicrobial resistance

OXA class
Oxacillinases (Class D)
OXA betalactamase
blaOXA-51-like [OXA-69]

Tracking

sender
Raffaele Zarrilli, Universita di Napoli Federico II
curator
Auto Tagger
update history
26 updates show details
date entered
2015-02-26
datestamp
2022-12-27

Sequence bin

contigs
1
length
3,936,291 bp
%GC
39.38
Ns
0
gaps
0
loci tagged
2,870

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST (Oxford)77100
MLST (Pasteur)77100
Ribosomal MLST5353100
A. baumannii cgMLST2133212799

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Acinetobacter baumannii Proteobacteria > Gammaproteobacteria > Moraxellales > Moraxellaceae > Acinetobacter > Acinetobacter baumannii 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Aba_cgc_200A. baumannii cgMLSTSingle-linkage200experimental5 (92 isolates)
Aba_cgc_100A. baumannii cgMLSTSingle-linkage100experimental5 (38 isolates)
Aba_cgc_200A. baumannii cgMLSTSingle-linkage200experimental5 (92 isolates)
Aba_cgc_100A. baumannii cgMLSTSingle-linkage100experimental5 (38 isolates)
Aba_cgc_50A. baumannii cgMLSTSingle-linkage50experimental6 (1 isolate)
Aba_cgc_25A. baumannii cgMLSTSingle-linkage25experimental6 (1 isolate)

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