Full information on isolate NIPH 70 (id:2242)

Projects

This isolate is a member of the following project:

whole genome MLST
Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website

Provenance/primary metadata

id
2242
isolate
NIPH 70
country
Czech Republic
continent
Europe
year
1992
species
Acinetobacter baumannii
species id method
unknown
source
upper respiratory tract
Genbank accession
APRC00000000.1 www.ncbi.nlm.nih.gov

Antimicrobial resistance

OXA class
Oxacillinases (Class D)
OXA betalactamase
blaOXA-51-like [OXA-259]

Tracking

sender
Raffaele Zarrilli, Universita di Napoli Federico II
curator
Auto Tagger
update history
31 updates show details
date entered
2015-02-26
datestamp
2022-12-27

Sequence bin

contigs
57
total length
3,926,921 bp
max length
663,535 bp
mean length
68,894 bp
N50
253,869
L50
5
N90
51,085
L90
15
N95
24,420
L95
20
%GC
38.94
Ns
0
gaps
0
loci tagged
2,763

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST (Oxford)77100
MLST (Pasteur)77100
Ribosomal MLST5353100
A. baumannii cgMLST2133211899

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Acinetobacter baumannii Proteobacteria > Gammaproteobacteria > Moraxellales > Moraxellaceae > Acinetobacter > Acinetobacter baumannii 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

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