Full information on isolate D1279779 (id:2241)
Projects
This isolate is a member of the following project:
- whole genome MLST
- Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website
Provenance/primary metadata
- id
- 2241
- isolate
- D1279779
- country
- Australia
- continent
- Oceania
- year
- 2011
- species
- Acinetobacter baumannii
- species id method
- unknown
- Genbank accession
- NC_020547.2 www.ncbi.nlm.nih.gov
Antimicrobial resistance
- OXA class
- Oxacillinases (Class D)
- OXA betalactamase
- blaOXA-51-like [OXA-180]
Tracking
- sender
- Raffaele Zarrilli, Universita di Napoli Federico II
- curator
- Auto Tagger
- update history
- 27 updates show details
- date entered
- 2015-02-26
- datestamp
- 2022-12-27
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST (Oxford) | 7 | 7 | 100 | |
| MLST (Pasteur) | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| A. baumannii cgMLST | 2133 | 2095 | 98 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Acinetobacter baumannii | Proteobacteria > Gammaproteobacteria > Moraxellales > Moraxellaceae > Acinetobacter > Acinetobacter baumannii | 100% |
Analysis performed: 2023-01-11
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Aba_cgc_200 | A. baumannii cgMLST | Single-linkage | 200 | experimental | 2 (10 isolates) |
| Aba_cgc_100 | A. baumannii cgMLST | Single-linkage | 100 | experimental | 2 (10 isolates) |
| Aba_cgc_50 | A. baumannii cgMLST | Single-linkage | 50 | experimental | 2 (10 isolates) |
| Aba_cgc_25 | A. baumannii cgMLST | Single-linkage | 25 | experimental | 2 (2 isolates) |
| Aba_cgc_200 | A. baumannii cgMLST | Single-linkage | 200 | experimental | 2 (10 isolates) |
| Aba_cgc_100 | A. baumannii cgMLST | Single-linkage | 100 | experimental | 2 (10 isolates) |
| Aba_cgc_50 | A. baumannii cgMLST | Single-linkage | 50 | experimental | 2 (10 isolates) |
| Aba_cgc_25 | A. baumannii cgMLST | Single-linkage | 25 | experimental | 2 (2 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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Analysis: