Full information on isolate ANC 4052 (id:2116)

Projects

This isolate is a member of the following project:

whole genome MLST
Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website

Provenance/primary metadata

id
2116
isolate
ANC 4052
country
USA
continent
North America
species
Acinetobacter lactucae
species id method
rpoB gene sequence
source
blood
Genbank accession
APQO00000000.1 www.ncbi.nlm.nih.gov
comments
1995-2002

Tracking

sender
Alexandr Nemec, National Institute of Public Heatlh, Prague, Czech Republic
curator
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update history
15 updates show details
date entered
2014-07-11
datestamp
2022-12-27

Publication (1)

  • Mar√≠-Almirall M, Cosgaya C, Higgins PG, Van Assche A, Telli M, Huys G, Lievens B, Seifert H, Dijkshoorn L, Roca I, Vila J (2017). MALDI-TOF/MS identification of species from the Acinetobacter baumannii (Ab) group revisited: inclusion of the novel A.¬†seifertii and A.¬†dijkshoorniae species. Clin Microbiol Infect 23:210.e1-210.e9

Sequence bin

contigs
8
total length
3,953,097 bp
max length
1,681,232 bp
mean length
494,138 bp
N50
1,452,189
L50
2
N90
277,481
L90
4
N95
112,215
L95
5
%GC
38.85
Ns
0
gaps
0
loci tagged
201

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST (Oxford)77100
MLST (Pasteur)77100
Ribosomal MLST5353100

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Acinetobacter lactucae Proteobacteria > Gammaproteobacteria > Moraxellales > Moraxellaceae > Acinetobacter > Acinetobacter lactucae 100%

Analysis performed: 2023-01-11

Tools

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