Full information on isolate 216872 (id:2076)
Provenance/primary metadata
- id
- 2076
- isolate
- 216872
- country
- USA
- continent
- North America
- species
- Acinetobacter nosocomialis
- species id method
- unknown
- source
- sputum
- Genbank accession
- JFEM00000000.1 www.ncbi.nlm.nih.gov
- comments
- Acinetobacter nosocomialis species identification was based on complete rpoB gene 99% identical to A. nosocomialis
Tracking
- sender
- NCBI NCBI, National Center for Biotechnology Information
- curator
- Auto Tagger
- update history
- 2 updates show details
- date entered
- 2014-07-02
- datestamp
- 2022-12-27
Sequence bin
- contigs
- 121
- total length
- 4,171,514 bp
- max length
- 236,225 bp
- mean length
- 34,476 bp
- N50
- 83,658
- L50
- 16
- N90
- 21,149
- L90
- 55
- N95
- 10,802
- L95
- 68
- %GC
- 38.84
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,034
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST (Oxford) | 7 | 7 | 100 | |
| MLST (Pasteur) | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Acinetobacter nosocomialis | Proteobacteria > Gammaproteobacteria > Moraxellales > Moraxellaceae > Acinetobacter > Acinetobacter nosocomialis | 100% |
Analysis performed: 2023-01-11
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: