Full information on isolate WC-487 (id:1947)
Provenance/primary metadata
- id
- 1947
- isolate
- WC-487
- country
- Iraq
- continent
- Asia
- year
- 2008
- species
- Acinetobacter nosocomialis
- species id method
- unknown
- source
- skin
- Genbank accession
- AMZR00000000.1 www.ncbi.nlm.nih.gov
- comments
- Acinetobacter nosocomialis species identification was based on complete rpoB gene sequences 99% identical to A. nosocomialis and Acinetobacter sp 13TU
Tracking
- sender
- NCBI NCBI, National Center for Biotechnology Information
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2013-12-15
- datestamp
- 2022-12-27
Sequence bin
- contigs
- 121
- total length
- 4,115,076 bp
- max length
- 226,724 bp
- mean length
- 34,009 bp
- N50
- 84,204
- L50
- 16
- N90
- 32,456
- L90
- 45
- N95
- 17,499
- L95
- 54
- %GC
- 38.70
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,714
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST (Oxford) | 7 | 6 | 85 | |
| MLST (Pasteur) | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Acinetobacter nosocomialis | Proteobacteria > Gammaproteobacteria > Moraxellales > Moraxellaceae > Acinetobacter > Acinetobacter nosocomialis | 100% |
Analysis performed: 2023-01-11
Schemes and loci
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