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Full information on isolate FS101087_LDI9198 (id:44339)

Projects

This isolate is a member of the following project:

FSA Campylobacter coli
Food Standards Agency funded project for generating tools for the molecular epidemiology of Campylobacter coli by next generation genome sequencing

Provenance/meta data

id
44339
isolate
FS101087_LDI9198
alias
H075200522
country
UK
continent
Europe
region
London
year
2007
source
environmental waters
species
Campylobacter coli
ENA accession
ERR1163788 www.ebi.ac.uk
sender
Clare Barker, University of Oxford
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
36 updates show details
date entered
2016-03-01
datestamp
2019-06-26

Publication (1)

  • Cody AJ, Bray JE, Jolley KA, McCarthy ND, Maiden MCJ (2017). Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates. J Clin Microbiol 55:2086-2097

Sequence bin

contigs
34
total length
1,571,203 bp
max length
379,040 bp
mean length
46,212 bp
N50 contig number
3
N50 length (L50)
202,679
N90 contig number
7
N90 length (L90)
128,274
N95 contig number
9
N95 length (L95)
43,394
loci tagged
1,416
detailed breakdown
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Schemes and loci

Tools

Analysis: