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Full information on isolate H042940540 (id:31118)

Provenance/meta data

id
31118
isolate
H042940540
country
UK
continent
Europe
region
London
year
2004
disease
carrier
source
other animal
epidemiology
carrier
species
Campylobacter sp.
comments
Species changed from C. coli to Campylobacter sp. based on rMLST species id scan run 01/08/2018 (1% support for identification to genus level only).
sender
Craig Swift, PHE, UK
curator
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update history
76 updates show details
date entered
2015-01-06
datestamp
2019-07-09

Publication (1)

  • Cody AJ, Bray JE, Jolley KA, McCarthy ND, Maiden MCJ (2017). Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates. J Clin Microbiol 55:2086-2097

Sequence bin

contigs
72
total length
1,850,719 bp
max length
210,773 bp
mean length
25,705 bp
N50 contig number
6
N50 length (L50)
107,699
N90 contig number
19
N90 length (L90)
29,760
N95 contig number
24
N95 length (L95)
10,859
loci tagged
1,165
detailed breakdown
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