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Full information on isolate OXC9177 (id:30856)

Projects

This isolate is a member of the following projects:

Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

Oxfordshire Human Surveillance YR4
DEFRA/FSA Oxfordshire human surveillance isolates July 2014 - June 2015
Oxfordshire Human Surveillance YR4_dedup
DEFRA/FSA Oxfordshire human surveillance isolates July 2014 - March 2015 de-duplicated

Provenance/meta data

id
30856
isolate
OXC9177
alias
F43210
country
UK
continent
Europe
region
Oxfordshire
year
2014
month
8
sex
male
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
ENA accession
ERR869675 www.ebi.ac.uk
sender
Alison Cody
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
68 updates show details
date entered
2014-10-24
datestamp
2019-06-26

Sequence bin

contigs
46
total length
1,699,894 bp
max length
315,866 bp
mean length
36,955 bp
N50 contig number
4
N50 length (L50)
148,599
N90 contig number
11
N90 length (L90)
71,664
N95 contig number
13
N95 length (L95)
20,468
loci tagged
1,678
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 1641 (916 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimentalgroup: 2722 (912 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimentalgroup: 4089 (858 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimentalgroup: 5942 (559 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimentalgroup: 9554 (158 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimentalgroup: 14374 (2 isolates)

Schemes and loci

Tools

Analysis: