PubMLST Database home Contents
Log in
Help

Full information on isolate OXC5212R (id:29893)

Projects

This isolate is a member of the following project:

Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

Provenance/meta data

id
29893
isolate
OXC5212R
alias
T78582
country
UK
continent
Europe
region
Oxfordshire
year
2010
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
ENA accession
ERR757214 www.ebi.ac.uk
sender
Alison Cody, Department of Zoology, Oxford University, UK
curator
Sophie Hedges, Oxford University (E-mail: sophie.hedges@zoo.ox.ac.uk)
update history
35 updates show details
date entered
2014-08-13
datestamp
2019-05-14

Publication (1)

  • Pearson BM, Louwen R, van Baarlen P, van Vliet AH (2015). Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments. Genome Biol Evol 7:2663-79

Sequence bin

contigs
1,403
total length
1,470,180 bp
max length
12,754 bp
mean length
1,048 bp
N50 contig number
221
N50 length (L50)
1,756
N90 contig number
897
N90 length (L90)
427
N95 contig number
1,103
N95 length (L95)
299
loci tagged
724
detailed breakdown
Display

Schemes and loci

Tools

Analysis: