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Full information on isolate OXC6181 (id:29720)

Projects

This isolate is a member of the following project:

Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

Provenance/meta data

id
29720
isolate
OXC6181
alias
H21300
country
UK
continent
Europe
region
Oxfordshire
year
2011
month
6
sex
male
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
ENA accession
ERR757339 www.ebi.ac.uk
sender
Alison Cody, Department of Zoology, Oxford University, UK
curator
Sophie Hedges, Oxford University (E-mail: sophie.hedges@zoo.ox.ac.uk)
update history
55 updates show details
date entered
2014-08-07
datestamp
2019-05-14

Sequence bin

contigs
1,447
total length
1,636,402 bp
max length
8,212 bp
mean length
1,131 bp
N50 contig number
277
N50 length (L50)
1,777
N90 contig number
961
N90 length (L90)
496
N95 contig number
1,152
N95 length (L95)
357
loci tagged
782
detailed breakdown
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Schemes and loci

Tools

Analysis: