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Full information on isolate OXC5667 (id:29653)

Projects

This isolate is a member of the following project:

Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

Provenance/meta data

id
29653
isolate
OXC5667
alias
W79861
country
UK
continent
Europe
region
Oxfordshire
year
2010
month
11
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter coli
ENA accession
ERR757241 www.ebi.ac.uk
sender
Alison Cody
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
49 updates show details
date entered
2014-08-07
datestamp
2019-07-15

Phenotypic fields

macrolide genotypes 2
A737G
tetracycline genotypes 2
tetO

Sequence bin

contigs
1,212
total length
1,300,180 bp
max length
9,806 bp
mean length
1,073 bp
N50 contig number
244
N50 length (L50)
1,593
N90 contig number
829
N90 length (L90)
485
N95 contig number
980
N95 length (L95)
363
loci tagged
553
detailed breakdown
Display

Schemes and loci

Tools

Analysis: