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Full information on isolate OXC5374 (id:29619)

Projects

This isolate is a member of the following project:

Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

Provenance/meta data

id
29619
isolate
OXC5374
alias
G38944
country
UK
continent
Europe
region
Oxfordshire
year
2010
month
8
sex
male
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
ENA accession
ERR757359 www.ebi.ac.uk
sender
Alison Cody
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
50 updates show details
date entered
2014-08-07
datestamp
2019-06-26

Sequence bin

contigs
831
total length
1,616,646 bp
max length
18,361 bp
mean length
1,946 bp
N50 contig number
140
N50 length (L50)
3,528
N90 contig number
479
N90 length (L90)
860
N95 contig number
596
N95 length (L95)
545
loci tagged
1,154
detailed breakdown
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Schemes and loci

Tools

Analysis: