PubMLST Database home Contents
Log in
Help

Full information on isolate Dg217 (id:25945)

Provenance/meta data

id
25945
isolate
Dg217
aliases
ERR348984; SC_RUN_10356_2#27
country
UK
continent
Europe
source
other animal
species
Campylobacter jejuni
ENA accession
ERR348984 www.ebi.ac.uk
sender
Helen Wimalarathna, University of Oxford, UK
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
56 updates show details
date entered
2014-01-06
datestamp
2019-06-26

Publications (3)

  • Cody AJ, Bray JE, Jolley KA, McCarthy ND, Maiden MCJ (2017). Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates. J Clin Microbiol 55:2086-2097
  • Pearson BM, Louwen R, van Baarlen P, van Vliet AH (2015). Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments. Genome Biol Evol 7:2663-79
  • Vegge CS, Jansen van Rensburg MJ, Rasmussen JJ, Maiden MC, Johnsen LG, Danielsen M, MacIntyre S, Ingmer H, Kelly DJ (2016). Glucose Metabolism via the Entner-Doudoroff Pathway in Campylobacter: A Rare Trait that Enhances Survival and Promotes Biofilm Formation in Some Isolates. Front Microbiol 7:1877

Sequence bin

contigs
33
total length
1,679,232 bp
max length
350,719 bp
mean length
50,886 bp
N50 contig number
4
N50 length (L50)
172,554
N90 contig number
11
N90 length (L90)
48,670
N95 contig number
14
N95 length (L95)
22,411
loci tagged
1,521
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 2147 (2 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimentalgroup: 3491 (2 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimentalgroup: 5134 (2 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimentalgroup: 7356 (2 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimentalgroup: 11102 (2 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimentalgroup: 13737 (2 isolates)

Schemes and loci

Tools

Analysis: