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Full information on isolate OXC5246 (id:24827)

Projects

This isolate is a member of the following project:

Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

Provenance/meta data

id
24827
isolate
OXC5246
alias
G32287
country
UK
continent
Europe
region
Oxfordshire
year
2010
month
7
sex
female
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
ENA accession
ERR594024 www.ebi.ac.uk
sender
Helen Wimalarathna, University of Oxford, UK
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
72 updates show details
date entered
2013-07-16
datestamp
2019-06-26

Publications (2)

  • Brown HL, Reuter M, Hanman K, Betts RP, van Vliet AH (2015). Prevention of biofilm formation and removal of existing biofilms by extracellular DNases of Campylobacter jejuni. PLoS One 10:e0121680
  • Pearson BM, Louwen R, van Baarlen P, van Vliet AH (2015). Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments. Genome Biol Evol 7:2663-79

Sequence bin

contigs
1,580
total length
1,541,119 bp
max length
10,762 bp
mean length
976 bp
N50 contig number
298
N50 length (L50)
1,448
N90 contig number
1,054
N90 length (L90)
419
N95 contig number
1,269
N95 length (L95)
309
loci tagged
642
detailed breakdown
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Schemes and loci

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