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Full information on isolate OXC4931 (id:24468)

Projects

This isolate is a member of the following project:

Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

Provenance/meta data

id
24468
isolate
OXC4931
aliases
ERR330609; M36776; SC_RUN_10050_5#56
country
UK
continent
Europe
region
Oxfordshire
year
2010
month
3
sex
male
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
ENA accession
ERR330609 www.ebi.ac.uk
sender
Alison Cody, Department of Zoology, Oxford University, UK
curator
Auto Tagger
update history
80 updates show details
date entered
2013-07-08
datestamp
2019-06-25

Publications (4)

  • Brown HL, Reuter M, Hanman K, Betts RP, van Vliet AH (2015). Prevention of biofilm formation and removal of existing biofilms by extracellular DNases of Campylobacter jejuni. PLoS One 10:e0121680
  • Cody AJ, Bray JE, Jolley KA, McCarthy ND, Maiden MCJ (2017). Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates. J Clin Microbiol 55:2086-2097
  • Cody AJ, McCarthy ND, Bray JE, Wimalarathna HM, Colles FM, Jansen van Rensburg MJ, Dingle KE, Waldenström J, Maiden MC (2015). Wild bird-associated Campylobacter jejuni isolates are a consistent source of human disease, in Oxfordshire, United Kingdom. Environ Microbiol Rep 7:782-8
  • Pearson BM, Louwen R, van Baarlen P, van Vliet AH (2015). Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments. Genome Biol Evol 7:2663-79

Sequence bin

contigs
59
total length
1,798,153 bp
max length
312,962 bp
mean length
30,478 bp
N50 contig number
5
N50 length (L50)
148,650
N90 contig number
15
N90 length (L90)
24,650
N95 contig number
19
N95 length (L95)
15,815
loci tagged
1,574
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 2048 (2 isolates)

Schemes and loci

Tools

Analysis: